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Amiclenomycin

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Identification
Molecular formula
C13H19N5O4
CAS number
18361-47-0
IUPAC name
(2R,3R,6S)-3-[[(3S)-3-amino-5-[carbamimidoyl(methyl)amino]pentanoyl]amino]-6-(4-amino-2-oxo-pyrimidin-1-yl)-3,6-dihydro-2H-pyran-2-carboxylic acid
State
State

Amiclenomycin is typically found in a solid state at room temperature, usually characterized by its crystalline form.

Melting point (Celsius)
210.00
Melting point (Kelvin)
483.15
Boiling point (Celsius)
325.00
Boiling point (Kelvin)
598.15
General information
Molecular weight
297.31g/mol
Molar mass
297.3110g/mol
Density
1.4700g/cm3
Appearence

Amiclenomycin appears as a crystalline solid. Its structure includes a pyran ring and an attached pyrimidine group, indicative of its heterocyclic nature.

Comment on solubility

Solubility of (2R,3R,6S)-3-[[[3S)-3-amino-5-[carbamimidoyl(methyl)amino]pentanoyl]amino]-6-(4-amino-2-oxo-pyrimidin-1-yl)-3,6-dihydro-2H-pyran-2-carboxylic acid

The solubility of this compound can be characterized by several key factors that influence how it behaves in various solvents. Understanding its solubility is essential for applications in pharmaceuticals and biochemical research.

  • Nature of Interactions: Solubility in water and organic solvents often depends on the balance of hydrophilic (water-attracting) and hydrophobic (water-repelling) characteristics. Given that this compound contains multiple amino groups, it may exhibit enhanced solubility in polar solvents.
  • pH Sensitivity: The solubility can also change significantly with pH levels since the ionization of amino and carboxylic acid groups is pH-dependent. Thus, at physiological pH (around 7.4), this compound is likely to be more soluble.
  • Temperature Effects: Increased temperature generally leads to higher solubility for many compounds. This is crucial in processing and handling in laboratory settings.
  • Crystalline Structure: If the compound forms crystalline structures, the degree of crystallinity might also affect solubility. Amorphous forms usually have higher solubility compared to their crystalline counterparts.

It is important to note that while its polar functional groups contribute to increasing solubility in aqueous environments, there may still be challenges in dissolving this compound in non-polar solvents due to its complex structure. Further investigation through empirical testing is often necessary to establish definitive solubility profiles.

Interesting facts

Interesting Facts About (2R,3R,6S)-3-[[(3S)-3-amino-5-[carbamimidoyl(methyl)amino]pentanoyl]amino]-6-(4-amino-2-oxo-pyrimidin-1-yl)-3,6-dihydro-2H-pyran-2-carboxylic acid

This compound, a notable entity in the realm of biochemistry, is primarily recognized for its role as a potential pharmacological agent. Here are some fascinating aspects:

  • Structural Complexity: The compound possesses an intricate structure that involves multiple elements such as amino acids and pyrimidine derivatives, highlighting the sophistication of natural product chemistry.
  • Biological Significance: Its various components, particularly the amino acids, play crucial roles in biochemical processes within living organisms, including protein synthesis and metabolic pathways.
  • Pharmaceutical Potential: Researchers are exploring this compound in relation to its possible effectiveness in treating specific diseases, making it a subject of interest in drug development.
  • Chirality: The stereochemistry, indicated by the (2R,3R,6S) configuration, adds to its complexity and can significantly influence its biological interactions, showcasing the importance of chirality in medicinal chemistry.
  • Interdisciplinary Applications: This compound serves as a bridge between organic chemistry, pharmacology, and medicinal chemistry, demonstrating the interconnectedness of scientific disciplines in the quest for new therapies.

In the words of renowned chemist Linus Pauling, "The best way to have a good idea is to have a lot of ideas." This compound exemplifies this philosophy, as it opens up numerous avenues for research and discovery within the scientific community. Its synthesis and the exploration of its properties continue to provide insight into the fascinating world of molecular interactions and therapeutic strategies.

Synonyms
Blasticidin S
Bla-S
Blastizidin
TOA bla-S
Blastizidin [German]
blasticidin-S
HSDB 6569
83U64J9U23
BLASTICIDIN S [MI]
BLASTICIDIN-S [HSDB]
1-(1'-Cytosinyl)-4-(L-3'-amino-5'-(1''-N-methylguanidino)valerylamino)-1,2,3,4-tetradeoxy-beta-D-erythro-hex-2-enuronic acid
CYTOSININE-BLASTIDIC ACID CONJUGATE
beta-D-erythro-Hex-2-enopyranuronic acid, 4-((3-amino-5-((aminoiminomethyl)methylamino)-1-oxopentyl)amino)-1-(4-amino-2-oxo-1(2H)-pyrimidinyl)-1,2,3,4-tetradeoxy-, (S)-
D-erythro-Hex-2-enopyranuronic acid, 4-(3-amino-5-(1-methylguanidino)valeramido)-1-(4-amino-2-oxo-1(2H)-pyrimidinyl)-1,2,3,4-tetradeoxy-
2079-00-7
(s)-4-((3-Amino-5-((aminoiminomethyl)methylamino)-1-oxopentyl)amino)-1-(4-amino-2-oxo-1(2h)-pyrimidin yl)-1,2,3,4-tetradeoxy-b-d-erythro-hex-2-enopyranuronic acid
1-(1'-Cytosinyl)-4-(l-3'-amino-5'-(1"-n-methylguanidino)valerylamino)-12,3,4-tetradeoxy-beta-d-erythro-hex-2-enuronic acid
1-(1'-CYTOSINYL)-4-(L-3'-AMINO-5'-(1''-N-METHYLGUANIDINO)-VALERYLAMINO)-1,2,3,4-TETRADEOXY-.BETA.-D-ERYTHRO-HEX-2-ENURONIC ACID
1-(4-Amino-1,2-dihydro-2-oxopyrimidin-1-yl)-4-((s)-3-amino-5-(1-methyl-guanidino)valeramido)-1,2,3,4-tetradeoxy-beta-d-erythro-hex-2-enopyra-nuronic acid
DTXSID0058015
TOA blaS
(S)-4-4((3-amino-5-((aminoiminomethyl)methylamino)-=1-oxopentyl)amino)-1-(4-amino-2-oxo-1(2H)-pyrimidinyl)-1,2,3,4-tetradeoxy-beta-D-erythro-hex-=2-enopyranuronic acid
(S)-4-4[[3-amino-5-[(aminoiminomethyl)methylamino]-=1-oxopentyl]amino]-1-[4-amino-2-oxo-1(2H)-pyrimidinyl]-1,2,3,4-tetradeoxy-beta-D-erythro-hex-=2-enopyranuronic acid
1-(4-amino-1,2-dihydro-2-oxopyrimidin-1-yl)-4-((S)-3-amino-=5-(1-methylguanidino)valeramido)-1,2,3,4-tetradeoxy-beta-D-erythro-hex-2-enopyranuronic acid
1-(4-amino-1,2-dihydro-2-oxopyrimidin-1-yl)-4-[(S)-3-amino-=5-(1-methylguanidino)valeramido]-1,2,3,4-tetradeoxy-beta-D-erythro-hex-2-enopyranuronic acid
1-(4-amino-1,2-dihydro-2-oxopyrimidin-1-yl)-4-{(S)-3-amino-5-(1-methyl-guanidino)valeramido]-1,2,3,4-tetradeoxy-beta-D-erythro-hex-2-enopyra-nuronic acid
BLASTICIDIN_S
DTXCID3031783
(2S,3S,6R)-3-(3-amino-5-(N-methylcarbamimidamido)pentanamido)-6-(4-amino-2-oxo-2H-pyrimidin-1-yl)-3,6-dihydro-2H-pyran-2-carboxylic acid
(2S,3S,6R)-3-[3-amino-5-(N-methylcarbamimidamido)pentanamido]-6-(4-amino-2-oxo-2H-pyrimidin-1-yl)-3,6-dihydro-2H-pyran-2-carboxylic acid
4-amino-1-(4-(((3S)-3-amino-5-(N-methylcarbamimidamido)pentanoyl)amino)-2,3,4-trideoxy-beta-D-erythro-hex-2-enopyranuronosyl)pyrimidin-2(1H)-one
4-amino-1-(4-{[(3S)-3-amino-5-(N-methylcarbamimidamido)pentanoyl]amino}-2,3,4-trideoxy-beta-D-erythro-hex-2-enopyranuronosyl)pyrimidin-2(1H)-one
UN3172
.beta.-D-erythro-Hex-2-enopyranuronic acid, 4-[[3-amino-5-[(aminoiminomethyl)methylamino]-1-oxopentyl]amino]-1-(4-amino-2-oxo-1(2H)-pyrimidinyl)-1,2,3,4-tetradeoxy-, (S)-
1(1'Cytosinyl)4(L3'amino5'(1''Nmethylguanidino)valerylamino)1,2,3,4tetradeoxybetaDerythrohex2enuronic acid
1-(1'-CYTOSINYL)-4-(L-3'-AMINO-5'-(1''-N-METHYLGUANIDINO)-VALERYLAMINO)-1,2,3,4-TETRADEOXY-BETA-D-ERYTHRO-HEX-2-ENURONIC ACID
606-640-2
betaDerythroHex2enopyranuronic acid, 4((3amino5((aminoiminomethyl)methylamino)1oxopentyl)amino)1(4amino2oxo1(2H)pyrimidinyl)1,2,3,4tetradeoxy, (S)
D-erythro-Hex-2-enopyranuronic acid, 4-(3-amino-5-(1-methylguanidino)valeramido)-1-(4-amino-2-oxo-1 (2H0-PYRIMIDINYL)-1,2,3,4-tetradeoxy-
DerythroHex2enopyranuronic acid, 4(3amino5(1methylguanidino)valeramido)1(4amino2oxo1(2H)pyrimidinyl)1,2,3,4tetradeoxy
(2s,3s,6r)-3-(((3s)-3-amino-5-(carbamimidoyl(methyl)amino)pentanoyl)amino)-6-(4-amino-2-oxopyrimidin-1-yl)-3,6-dihydro-2h-pyran-2-carboxylic acid
(2s,3s,6r)-3-[[(3s)-3-amino-5-[carbamimidoyl(methyl)amino]pentanoyl]amino]-6-(4-amino-2-oxopyrimidin-1-yl)-3,6-dihydro-2h-pyran-2-carboxylic acid
CYTOVIRIN
UNII-83U64J9U23
CHEMBL511116
SCHEMBL15263240