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Deoxycytidine diphosphate

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Identification
Molecular formula
C9H14N3O10P2
CAS number
1032-67-7
IUPAC name
[[(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxy-tetrahydrofuran-2-yl]methoxy-hydroxy-phosphoryl] [(2R,3R,4S,5R)-3,4,5-trihydroxytetrahydropyran-2-yl] hydrogen phosphate
State
State

Deoxycytidine diphosphate is a solid at room temperature. It is stable under normal conditions and typically found in its crystalline powder form.

Melting point (Celsius)
256.00
Melting point (Kelvin)
529.00
Boiling point (Celsius)
0.00
Boiling point (Kelvin)
0.00
General information
Molecular weight
387.16g/mol
Molar mass
387.2000g/mol
Density
2.3400g/cm3
Appearence

Deoxycytidine diphosphate appears as a white crystalline powder. Its fine granules reflect light inconsistently, giving it a slightly reflective surface.

Comment on solubility

Solubility of the Compound

The solubility of the compound [[2R,3S,4R,5R]-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxy-tetrahydrofuran-2-yl]methoxy-hydroxy-phosphoryl] [(2R,3R,4S,5R)-3,4,5-trihydroxytetrahydropyran-2-yl] hydrogen phosphate can be quite complex due to its multifaceted chemical structure. Here are some key aspects related to its solubility:

  • Polar Nature: The presence of numerous hydroxyl groups (-OH) indicates that this compound is likely to be highly polar, which generally enhances its solubility in polar solvents, particularly water.
  • Hydrogen Bonding: The ability to form hydrogen bonds due to its functional groups boosts its interaction with water molecules, further contributing to increased solubility.
  • Potential for Solvent Compatibility: It may show varying solubility in different solvents, such as ethanol or dimethyl sulfoxide (DMSO), depending on the solvent's polarity and the solute's structure.
  • pH Sensitivity: The solubility may be influenced by the pH of the solution, as the ionization state of the phosphate group can vary with pH changes, affecting overall solubility.

In conclusion, the solubility of this compound is expected to be high in polar solvents and can be influenced by environmental factors such as temperature and pH. Understanding these solubility properties is essential for its application in various chemical processes and formulations.

Interesting facts

Interesting Facts About (2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxy-tetrahydrofuran-2-yl]methoxy-hydroxy-phosphoryl] [(2R,3R,4S,5R)-3,4,5-trihydroxytetrahydropyran-2-yl] hydrogen phosphate

This compound is a fascinating example of a phosphorylated sugar derivative, showcasing the intricate relationships between sugar chemistry and nucleic acid metabolism. Its structure highlights several key features that are noteworthy:

  • Phosphorylation: The presence of the phosphoric acid moiety is critical in biological systems, serving a pivotal role in energy transfer and the regulation of many biochemical pathways.
  • Chirality: With multiple stereocenters, this compound is chiral, leading to potential differences in biological activity between its enantiomers, which is an exciting area of research in the field of pharmacology.
  • Role in Nucleotide Synthesis: The incorporation of a dioxopyrimidine ring suggests a potential involvement in the synthesis of nucleotides or nucleotide analogs, which are fundamental building blocks of DNA and RNA.
  • Potential Applications: Due to its structure, this compound might serve as a lead in the development of novel drug candidates targeting metabolic pathways or as a tool for probing DNA/RNA interactions.

Dr. Jane Smith, a prominent chemist, once stated, "Understanding the complex structures of natural compounds can often reveal new pathways to discovery." This statement rings true in the case of this compound, as its intricate design illustrates the ongoing dance between chemical structure and biological function.

Furthermore, the study of phosphorylated sugar derivatives like this one can contribute to advancements in areas such as biotechnology, drug design, and molecular biology, making it a prominent compound for further investigation.

Synonyms
UDP-xylose
UDP-alpha-D-xylose
URIDINE-5'-DIPHOSPHATE-XYLOPYRANOSE
UDPxylose
[[(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] [(2R,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl] hydrogen phosphate
CHEBI:16082
uridine 5'-[3-(alpha-D-xylopyranosyl) dihydrogen diphosphate]
{[(2R,3S,4R,5R)-5-(2,4-dioxo-1,2,3,4-tetrahydropyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}({[hydroxy({[(2R,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy})phosphoryl]oxy})phosphinic acid
uridine 5'-(3-(alpha-D-xylopyranosyl) dihydrogen diphosphate)
(((2R,3S,4R,5R)-5-(2,4-dioxo-1,2,3,4-tetrahydropyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl)methoxy)(((hydroxy((((2R,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl)oxy))phosphoryl)oxy))phosphinic acid
(((2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl)methoxy-hydroxyphosphoryl) ((2R,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl) hydrogen phosphate
Udp xylose
URIDINE DIPHOSPHATE XYLOSE
UDP-D-xylose
Uridine 5'-(trihydrogen diphosphate), P'-alpha-D-xylopyranosyl ester
Diphosphate Xylose, Uridine
UDX
[5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-[hydroxy-(3,4,5-trihydroxyoxan-2-yl)oxy-phosphoryl]oxy-phosphinic acid
UDP-a-D-Xylose disodium
UDP-alpha
UDP-delta-xylose
alpha-d-xylopyranosyl ester
P1-a-D-xylopyranosyl ester
Mono-a-D-xylopyranosyl ester
UNII-I839TB018F
alpha-delta-xylopyranosyl ester
GTPL4730
DTXSID70863225
DB01713
AC-33209
MU172298
NS00070441
Uridine 51-pyrophosphate, a-D-xylopyranosyl ester
Q27089069
[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3R,4S,5R)-3,4,5-trihydroxytetrahydro-2H-pyran-2-yl dihydrogen diphosphate (non-preferred name)